Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Pcdhgb8A0A140LI48 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Pcdhgb8A0A140LI48 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Pcdhgb8A0A140LI48 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.33□□□□□ -0.11
Pcdhgb8A0A140LI48 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
Pcdhgb8A0A140LI48 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Pcdhgb8A0A140LI48 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm14859-201ENSMUST00000117752 357 ntBASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Pcdhgb8A0A140LI48 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Pcdhgb8A0A140LI48 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC14.31□□□□□ -0.12
Pcdhgb8A0A140LI48 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms