Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trav4-3A0A0B4J1K1 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm42545-201ENSMUST00000202755 922 ntBASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 AC120002.2-201ENSMUST00000220205 773 ntBASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm21596-201ENSMUST00000178049 1316 ntBASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm5357-201ENSMUST00000212720 1924 ntBASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 AC148324.1-201ENSMUST00000219034 4240 ntBASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 AC163280.1-201ENSMUST00000228194 1100 ntBASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC10.8□□□□□ -0.68
Trav4-3A0A0B4J1K1 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm29340-201ENSMUST00000188763 3854 ntBASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms