Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Gm13312-201ENSMUST00000119631 718 ntBASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Olfr129-201ENSMUST00000122318 993 ntBASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Prpf40aQ9R1C7 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Gm27357-201ENSMUST00000183754 135 ntBASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Prpf40aQ9R1C7 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Prpf40aQ9R1C7 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Rprl3-201ENSMUST00000157400 290 ntBASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Prpf40aQ9R1C7 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms