Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nubp1Q9R060 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nubp1Q9R060 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC13.91□□□□□ -0.18
Nubp1Q9R060 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gm8784-201ENSMUST00000222096 1435 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gm15074-201ENSMUST00000117603 936 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gm8396-201ENSMUST00000057361 823 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13.9□□□□□ -0.18
Nubp1Q9R060 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nubp1Q9R060 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Nubp1Q9R060 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm43452-201ENSMUST00000201873 991 ntBASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.89□□□□□ -0.19
Nubp1Q9R060 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nubp1Q9R060 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm4459-201ENSMUST00000118750 468 ntBASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Nubp1Q9R060 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm45696-201ENSMUST00000212088 985 ntBASIC13.88□□□□□ -0.19
Nubp1Q9R060 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nubp1Q9R060 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms