Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upk3aQ9JKX8 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm7153-201ENSMUST00000117092 455 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44357-201ENSMUST00000195897 142 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm19658-201ENSMUST00000196231 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44367-201ENSMUST00000196836 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44350-201ENSMUST00000197197 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44390-201ENSMUST00000197533 144 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44313-201ENSMUST00000198018 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44486-201ENSMUST00000198508 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44314-201ENSMUST00000199263 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44394-201ENSMUST00000199558 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44484-201ENSMUST00000199873 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44466-201ENSMUST00000200264 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Gm44359-201ENSMUST00000200671 138 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upk3aQ9JKX8 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Upk3aQ9JKX8 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Gm7669-201ENSMUST00000210184 1603 ntBASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Ccdc166-201ENSMUST00000182172 2584 ntBASIC15.22■□□□□ 0.03
Upk3aQ9JKX8 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 App-207ENSMUST00000227737 2827 ntBASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.21■□□□□ 0.03
Upk3aQ9JKX8 Gm37584-201ENSMUST00000193595 1290 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms