Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Gm27321-201ENSMUST00000185021 205 ntBASIC16.67■□□□□ 0.26
Clp1Q99LI9 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Thap2-203ENSMUST00000218989 527 ntBASIC16.67■□□□□ 0.26
Clp1Q99LI9 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.67■□□□□ 0.26
Clp1Q99LI9 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Clp1Q99LI9 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Gm11745-201ENSMUST00000121669 448 ntBASIC16.66■□□□□ 0.26
Clp1Q99LI9 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Mir6990-201ENSMUST00000183724 91 ntBASIC16.66■□□□□ 0.26
Clp1Q99LI9 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Clp1Q99LI9 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.65■□□□□ 0.26
Clp1Q99LI9 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.65■□□□□ 0.26
Clp1Q99LI9 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Clp1Q99LI9 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gm20553-201ENSMUST00000204205 844 ntBASIC16.64■□□□□ 0.25
Clp1Q99LI9 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gm5186-201ENSMUST00000218781 920 ntBASIC16.64■□□□□ 0.25
Clp1Q99LI9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Clp1Q99LI9 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Clp1Q99LI9 Gm43474-201ENSMUST00000196415 774 ntBASIC16.63■□□□□ 0.25
Clp1Q99LI9 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms