Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 App-207ENSMUST00000227737 2827 ntBASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Brf1Q8CFK2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Gm9172-201ENSMUST00000212092 954 ntBASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Prob1-201ENSMUST00000097619 3021 ntBASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Brf1Q8CFK2 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Brf1Q8CFK2 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Brf1Q8CFK2 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms