Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps53Q8CCB4 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Gm12644-201ENSMUST00000119935 606 ntBASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Gm25925-201ENSMUST00000158314 306 ntBASIC18.42■□□□□ 0.54
Vps53Q8CCB4 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps53Q8CCB4 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Rps4l-201ENSMUST00000071745 943 ntBASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps53Q8CCB4 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Gm18206-201ENSMUST00000207027 926 ntBASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps53Q8CCB4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vps53Q8CCB4 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vps53Q8CCB4 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vps53Q8CCB4 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Vps53Q8CCB4 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps53Q8CCB4 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps53Q8CCB4 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps53Q8CCB4 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms