Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm27646-201ENSMUST00000183989 110 ntBASIC18.69■□□□□ 0.58
Trim56Q80VI1 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.69■□□□□ 0.58
Trim56Q80VI1 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Gm6089-201ENSMUST00000197666 938 ntBASIC18.68■□□□□ 0.58
Trim56Q80VI1 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 App-207ENSMUST00000227737 2827 ntBASIC18.68■□□□□ 0.58
Trim56Q80VI1 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim56Q80VI1 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim56Q80VI1 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim56Q80VI1 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Gm10060-201ENSMUST00000212002 111 ntBASIC18.66■□□□□ 0.58
Trim56Q80VI1 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim56Q80VI1 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.66■□□□□ 0.58
Trim56Q80VI1 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim56Q80VI1 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms