Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Gm13418-201ENSMUST00000119097 944 ntBASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Gm15173-201ENSMUST00000122049 433 ntBASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb4Q6P8W9 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Hmgb4Q6P8W9 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.58■□□□□ 0.25
Hmgb4Q6P8W9 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Hmgb4Q6P8W9 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Gm12350-201ENSMUST00000121208 462 ntBASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.58■□□□□ 0.24
Hmgb4Q6P8W9 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb4Q6P8W9 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Gm4535-201ENSMUST00000182274 558 ntBASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.56■□□□□ 0.24
Hmgb4Q6P8W9 AC132104.2-201ENSMUST00000215011 266 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms