Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Usf1Q61069 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.41□□□□□ -0.1
Usf1Q61069 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
Usf1Q61069 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Usf1Q61069 Gm15427-201ENSMUST00000117288 531 ntBASIC14.4□□□□□ -0.1
Usf1Q61069 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC14.4□□□□□ -0.1
Usf1Q61069 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.4□□□□□ -0.1
Usf1Q61069 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC14.4□□□□□ -0.1
Usf1Q61069 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.4□□□□□ -0.1
Usf1Q61069 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Usf1Q61069 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.4□□□□□ -0.1
Usf1Q61069 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC14.4□□□□□ -0.1
Usf1Q61069 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usf1Q61069 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.39□□□□□ -0.11
Usf1Q61069 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.39□□□□□ -0.11
Usf1Q61069 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.39□□□□□ -0.11
Usf1Q61069 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Gm45612-201ENSMUST00000211320 160 ntBASIC14.39□□□□□ -0.11
Usf1Q61069 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usf1Q61069 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usf1Q61069 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC14.39□□□□□ -0.11
Usf1Q61069 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usf1Q61069 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Usf1Q61069 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Usf1Q61069 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.38□□□□□ -0.11
Usf1Q61069 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usf1Q61069 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Usf1Q61069 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.38□□□□□ -0.11
Usf1Q61069 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usf1Q61069 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC14.38□□□□□ -0.11
Usf1Q61069 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Usf1Q61069 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.38□□□□□ -0.11
Usf1Q61069 Gm45747-201ENSMUST00000212203 999 ntBASIC14.38□□□□□ -0.11
Usf1Q61069 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Usf1Q61069 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Usf1Q61069 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms