Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col6a1Q04857 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm13616-201ENSMUST00000120600 222 ntBASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm25406-201ENSMUST00000157599 105 ntBASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm5682-201ENSMUST00000173402 505 ntBASIC17.46■□□□□ 0.39
Col6a1Q04857 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.46■□□□□ 0.39
Col6a1Q04857 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Col6a1Q04857 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.46■□□□□ 0.39
Col6a1Q04857 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.46■□□□□ 0.39
Col6a1Q04857 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a1Q04857 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col6a1Q04857 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
Col6a1Q04857 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.45■□□□□ 0.38
Col6a1Q04857 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Gm17271-201ENSMUST00000165535 355 ntBASIC17.45■□□□□ 0.38
Col6a1Q04857 AC131709.1-201ENSMUST00000224731 1180 ntBASIC17.45■□□□□ 0.38
Col6a1Q04857 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a1Q04857 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Col6a1Q04857 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.45■□□□□ 0.38
Col6a1Q04857 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a1Q04857 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.44■□□□□ 0.38
Col6a1Q04857 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.44■□□□□ 0.38
Col6a1Q04857 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a1Q04857 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.43■□□□□ 0.38
Col6a1Q04857 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Col6a1Q04857 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Col6a1Q04857 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Col6a1Q04857 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.43■□□□□ 0.38
Col6a1Q04857 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.43■□□□□ 0.38
Col6a1Q04857 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a1Q04857 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col6a1Q04857 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col6a1Q04857 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.42■□□□□ 0.38
Col6a1Q04857 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Col6a1Q04857 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.42■□□□□ 0.38
Col6a1Q04857 Gm27646-201ENSMUST00000183989 110 ntBASIC17.42■□□□□ 0.38
Col6a1Q04857 Gm43438-201ENSMUST00000198133 379 ntBASIC17.42■□□□□ 0.38
Col6a1Q04857 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.42■□□□□ 0.38
Col6a1Q04857 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a1Q04857 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Col6a1Q04857 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms