Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Col8a1Q00780 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Col8a1Q00780 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col8a1Q00780 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC13.48□□□□□ -0.25
Col8a1Q00780 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
Col8a1Q00780 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC13.48□□□□□ -0.25
Col8a1Q00780 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13.48□□□□□ -0.25
Col8a1Q00780 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.48□□□□□ -0.25
Col8a1Q00780 CT025535.1-201ENSMUST00000227172 491 ntBASIC13.48□□□□□ -0.25
Col8a1Q00780 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Gm43338-201ENSMUST00000198617 2223 ntBASIC13.48□□□□□ -0.25
Col8a1Q00780 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC13.48□□□□□ -0.25
Col8a1Q00780 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col8a1Q00780 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm7292-201ENSMUST00000194706 2527 ntBASIC13.47□□□□□ -0.25
Col8a1Q00780 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm4899-201ENSMUST00000178708 719 ntBASIC13.47□□□□□ -0.25
Col8a1Q00780 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm17968-201ENSMUST00000194902 784 ntBASIC13.47□□□□□ -0.25
Col8a1Q00780 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.47□□□□□ -0.25
Col8a1Q00780 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col8a1Q00780 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms