Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdx2P43241 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.02■□□□□ -0
Cdx2P43241 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdx2P43241 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Cdx2P43241 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.02□□□□□ -0.01
Cdx2P43241 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.02□□□□□ -0.01
Cdx2P43241 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Cdx2P43241 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdx2P43241 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdx2P43241 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdx2P43241 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdx2P43241 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Cdx2P43241 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Cdx2P43241 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Gm13616-201ENSMUST00000120600 222 ntBASIC15.01□□□□□ -0.01
Cdx2P43241 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.01□□□□□ -0.01
Cdx2P43241 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.01□□□□□ -0.01
Cdx2P43241 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Cdx2P43241 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdx2P43241 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.01□□□□□ -0.01
Cdx2P43241 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Cdx2P43241 Gm44832-201ENSMUST00000208849 2303 ntBASIC15□□□□□ -0.01
Cdx2P43241 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm43702-201ENSMUST00000198772 2546 ntBASIC15□□□□□ -0.01
Cdx2P43241 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm13294-201ENSMUST00000121757 1330 ntBASIC15□□□□□ -0.01
Cdx2P43241 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm12892-201ENSMUST00000117367 1146 ntBASIC15□□□□□ -0.01
Cdx2P43241 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15□□□□□ -0.01
Cdx2P43241 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm5177-201ENSMUST00000183092 997 ntBASIC15□□□□□ -0.01
Cdx2P43241 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC15□□□□□ -0.01
Cdx2P43241 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC15□□□□□ -0.01
Cdx2P43241 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Cdx2P43241 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdx2P43241 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC14.99□□□□□ -0.01
Cdx2P43241 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Gm15427-201ENSMUST00000117288 531 ntBASIC14.99□□□□□ -0.01
Cdx2P43241 Gm13365-201ENSMUST00000121188 973 ntBASIC14.99□□□□□ -0.01
Cdx2P43241 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.99□□□□□ -0.01
Cdx2P43241 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Gm27301-201ENSMUST00000184012 127 ntBASIC14.99□□□□□ -0.01
Cdx2P43241 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.99□□□□□ -0.01
Cdx2P43241 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdx2P43241 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Cdx2P43241 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms