Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm7862-201ENSMUST00000121461 292 ntBASIC12.32□□□□□ -0.44
Hoxd3P09027 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.32□□□□□ -0.44
Hoxd3P09027 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Gm4535-201ENSMUST00000182274 558 ntBASIC12.31□□□□□ -0.44
Hoxd3P09027 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC12.31□□□□□ -0.44
Hoxd3P09027 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC12.31□□□□□ -0.44
Hoxd3P09027 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Gm10355-201ENSMUST00000097146 517 ntBASIC12.31□□□□□ -0.44
Hoxd3P09027 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Hoxd3P09027 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC12.31□□□□□ -0.44
Hoxd3P09027 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm37166-201ENSMUST00000195473 2474 ntBASIC12.3□□□□□ -0.44
Hoxd3P09027 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm8097-201ENSMUST00000117903 829 ntBASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm9449-201ENSMUST00000207265 1011 ntBASIC12.3□□□□□ -0.44
Hoxd3P09027 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Gm8655-201ENSMUST00000221159 852 ntBASIC12.3□□□□□ -0.44
Hoxd3P09027 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Hoxd3P09027 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC12.3□□□□□ -0.44
Hoxd3P09027 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Gm26596-201ENSMUST00000180464 2655 ntBASIC12.29□□□□□ -0.44
Hoxd3P09027 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms