Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Lmx1bO88609 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC14.35□□□□□ -0.11
Lmx1bO88609 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.35□□□□□ -0.11
Lmx1bO88609 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.35□□□□□ -0.11
Lmx1bO88609 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.35□□□□□ -0.11
Lmx1bO88609 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Lmx1bO88609 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lmx1bO88609 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC14.34□□□□□ -0.11
Lmx1bO88609 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Gm13418-201ENSMUST00000119097 944 ntBASIC14.34□□□□□ -0.11
Lmx1bO88609 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.34□□□□□ -0.11
Lmx1bO88609 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.34□□□□□ -0.11
Lmx1bO88609 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.34□□□□□ -0.11
Lmx1bO88609 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Lmx1bO88609 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lmx1bO88609 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.33□□□□□ -0.11
Lmx1bO88609 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lmx1bO88609 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Lmx1bO88609 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Lmx1bO88609 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Lmx1bO88609 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lmx1bO88609 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms