Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Sdc4O35988 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.31■□□□□ 0.2
Sdc4O35988 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sdc4O35988 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.31■□□□□ 0.2
Sdc4O35988 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sdc4O35988 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sdc4O35988 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Gm6257-201ENSMUST00000163864 910 ntBASIC16.3■□□□□ 0.2
Sdc4O35988 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.3■□□□□ 0.2
Sdc4O35988 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Sdc4O35988 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.3■□□□□ 0.2
Sdc4O35988 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sdc4O35988 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.29■□□□□ 0.2
Sdc4O35988 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Gm8344-201ENSMUST00000119813 856 ntBASIC16.29■□□□□ 0.2
Sdc4O35988 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.29■□□□□ 0.2
Sdc4O35988 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.29■□□□□ 0.2
Sdc4O35988 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.29■□□□□ 0.2
Sdc4O35988 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Sdc4O35988 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.29■□□□□ 0.2
Sdc4O35988 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.29■□□□□ 0.2
Sdc4O35988 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Sdc4O35988 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.29■□□□□ 0.2
Sdc4O35988 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sdc4O35988 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Sdc4O35988 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Sdc4O35988 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.28■□□□□ 0.2
Sdc4O35988 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.28■□□□□ 0.2
Sdc4O35988 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.28■□□□□ 0.2
Sdc4O35988 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.28■□□□□ 0.2
Sdc4O35988 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.28■□□□□ 0.2
Sdc4O35988 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Sdc4O35988 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.28■□□□□ 0.2
Sdc4O35988 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.28■□□□□ 0.2
Sdc4O35988 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.28■□□□□ 0.2
Sdc4O35988 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sdc4O35988 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Sdc4O35988 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms