Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Clk3O35492 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.12■□□□□ 0.01
Clk3O35492 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Clk3O35492 Gm37722-201ENSMUST00000193757 208 ntBASIC15.12■□□□□ 0.01
Clk3O35492 Gm44450-201ENSMUST00000199528 114 ntBASIC15.12■□□□□ 0.01
Clk3O35492 Gm18421-201ENSMUST00000204122 625 ntBASIC15.12■□□□□ 0.01
Clk3O35492 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Clk3O35492 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Clk3O35492 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.11■□□□□ 0.01
Clk3O35492 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Clk3O35492 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15.11■□□□□ 0.01
Clk3O35492 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Clk3O35492 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Clk3O35492 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC15.11■□□□□ 0.01
Clk3O35492 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.11■□□□□ 0.01
Clk3O35492 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC15.11■□□□□ 0.01
Clk3O35492 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.11■□□□□ 0.01
Clk3O35492 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC15.11■□□□□ 0.01
Clk3O35492 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Clk3O35492 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Clk3O35492 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Clk3O35492 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Clk3O35492 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Clk3O35492 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Clk3O35492 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Clk3O35492 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Gm6659-201ENSMUST00000174752 547 ntBASIC15.1■□□□□ 0.01
Clk3O35492 Gm23634-201ENSMUST00000175071 91 ntBASIC15.1■□□□□ 0.01
Clk3O35492 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.1■□□□□ 0.01
Clk3O35492 Gm5587-201ENSMUST00000206270 674 ntBASIC15.1■□□□□ 0.01
Clk3O35492 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Clk3O35492 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
Clk3O35492 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.1■□□□□ 0.01
Clk3O35492 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.1■□□□□ 0.01
Clk3O35492 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Clk3O35492 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Clk3O35492 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Clk3O35492 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Clk3O35492 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.09■□□□□ 0.01
Clk3O35492 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Clk3O35492 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms