Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Gm6257-201ENSMUST00000163864 910 ntBASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Gm6376-201ENSMUST00000209407 580 ntBASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cpsf3Q9QXK7 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm4535-201ENSMUST00000182274 558 ntBASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm18622-201ENSMUST00000219361 595 ntBASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm10355-201ENSMUST00000097146 517 ntBASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cpsf3Q9QXK7 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Gm7862-201ENSMUST00000121461 292 ntBASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cpsf3Q9QXK7 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Gm13418-201ENSMUST00000119097 944 ntBASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Gm11780-201ENSMUST00000136880 516 ntBASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Cpsf3Q9QXK7 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms