Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Gm5864-201ENSMUST00000202263 970 ntBASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Mir6404-201ENSMUST00000183699 94 ntBASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps28Q9D1C8 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps28Q9D1C8 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Gm25406-201ENSMUST00000157599 105 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Gm7506-201ENSMUST00000207758 815 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Vps28Q9D1C8 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps28Q9D1C8 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps28Q9D1C8 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps28Q9D1C8 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms