Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Gm11336-201ENSMUST00000118168 334 ntBASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Smc1aQ9CU62 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Smc1aQ9CU62 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Mir8098-201ENSMUST00000184011 137 ntBASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Smc1aQ9CU62 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Gm27459-201ENSMUST00000184860 107 ntBASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
Smc1aQ9CU62 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Smc1aQ9CU62 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms