Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Sybu-209ENSMUST00000228639 4113 ntBASIC16.79■□□□□ 0.28
Usp11Q99K46 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.79■□□□□ 0.28
Usp11Q99K46 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp11Q99K46 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp11Q99K46 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.78■□□□□ 0.28
Usp11Q99K46 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp11Q99K46 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Usp11Q99K46 Gm6623-201ENSMUST00000173570 544 ntBASIC16.78■□□□□ 0.28
Usp11Q99K46 Gm17808-201ENSMUST00000200859 894 ntBASIC16.78■□□□□ 0.28
Usp11Q99K46 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.78■□□□□ 0.28
Usp11Q99K46 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp11Q99K46 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.78■□□□□ 0.28
Usp11Q99K46 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp11Q99K46 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp11Q99K46 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp11Q99K46 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp11Q99K46 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.77■□□□□ 0.27
Usp11Q99K46 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.77■□□□□ 0.27
Usp11Q99K46 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Usp11Q99K46 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Gm11950-201ENSMUST00000121615 838 ntBASIC16.76■□□□□ 0.27
Usp11Q99K46 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp11Q99K46 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Usp11Q99K46 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms