Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lsm1Q8VC85 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Gm45212-201ENSMUST00000205831 3403 ntBASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lsm1Q8VC85 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Mir6404-201ENSMUST00000183699 94 ntBASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Krtap5-1-202ENSMUST00000188274 742 ntBASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lsm1Q8VC85 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lsm1Q8VC85 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms