Protein–RNA interactions for Protein: Q8R3Q6

Ccdc58, Coiled-coil domain-containing protein 58, mousemouse

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc58Q8R3Q6 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Gm10698-201ENSMUST00000182663 604 ntBASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Gm7791-201ENSMUST00000219066 539 ntBASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ccdc58Q8R3Q6 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 AC164629.5-201ENSMUST00000220387 632 ntBASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc58Q8R3Q6 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc58Q8R3Q6 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 AC175538.1-201ENSMUST00000225343 1269 ntBASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc58Q8R3Q6 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms