Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ushbp1Q8R370 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Ushbp1Q8R370 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ushbp1Q8R370 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Gm12644-201ENSMUST00000119935 606 ntBASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 AC132104.2-201ENSMUST00000215011 266 ntBASIC17.76■□□□□ 0.43
Ushbp1Q8R370 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ushbp1Q8R370 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms