Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Gm44450-201ENSMUST00000199528 114 ntBASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ccdc28bQ8CEG5 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc28bQ8CEG5 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc28bQ8CEG5 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.1
Ccdc28bQ8CEG5 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc28bQ8CEG5 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc28bQ8CEG5 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc28bQ8CEG5 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.7■□□□□ 0.1
Ccdc28bQ8CEG5 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28bQ8CEG5 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms