Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trim9Q8C7M3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Trim9Q8C7M3 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim9Q8C7M3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Gm14859-201ENSMUST00000117752 357 ntBASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim9Q8C7M3 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim9Q8C7M3 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms