Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.59■□□□□ 0.41
Trim47Q8C0E3 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim47Q8C0E3 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim47Q8C0E3 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim47Q8C0E3 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim47Q8C0E3 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Gm44771-201ENSMUST00000206975 626 ntBASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim47Q8C0E3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm6089-201ENSMUST00000197666 938 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm18195-201ENSMUST00000207604 706 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm10060-201ENSMUST00000212002 111 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Grk6-207ENSMUST00000225925 2769 ntBASIC17.57■□□□□ 0.4
Trim47Q8C0E3 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim47Q8C0E3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim47Q8C0E3 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trim47Q8C0E3 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim47Q8C0E3 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms