Protein–RNA interactions for Protein: Q6PAV2

Herc4, Probable E3 ubiquitin-protein ligase HERC4, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Herc4Q6PAV2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Herc4Q6PAV2 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Herc4Q6PAV2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Herc4Q6PAV2 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Herc4Q6PAV2 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm27357-201ENSMUST00000183754 135 ntBASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm44454-201ENSMUST00000198541 138 ntBASIC17.57■□□□□ 0.4
Herc4Q6PAV2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Herc4Q6PAV2 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Gm21362-201ENSMUST00000194272 928 ntBASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Herc4Q6PAV2 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Gm17807-201ENSMUST00000186869 298 ntBASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Herc4Q6PAV2 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.54■□□□□ 0.4
Herc4Q6PAV2 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Herc4Q6PAV2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms