Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Gm18195-201ENSMUST00000207604 706 ntBASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rtl3Q6P1Y1 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.39■□□□□ 0.22
Rtl3Q6P1Y1 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Rtl3Q6P1Y1 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Rtl3Q6P1Y1 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rtl3Q6P1Y1 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rtl3Q6P1Y1 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms