Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim28Q62318 Gm7286-201ENSMUST00000182691 1007 ntBASIC20.58■□□□□ 0.89
Trim28Q62318 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim28Q62318 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC20.58■□□□□ 0.89
Trim28Q62318 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
Trim28Q62318 AC151836.1-202ENSMUST00000226259 753 ntBASIC20.58■□□□□ 0.89
Trim28Q62318 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Trim28Q62318 Gm13337-201ENSMUST00000119183 1594 ntBASIC20.58■□□□□ 0.88
Trim28Q62318 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim28Q62318 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC20.57■□□□□ 0.88
Trim28Q62318 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trim28Q62318 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC20.57■□□□□ 0.88
Trim28Q62318 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC20.57■□□□□ 0.88
Trim28Q62318 Mir8117-201ENSMUST00000184773 107 ntBASIC20.57■□□□□ 0.88
Trim28Q62318 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC20.57■□□□□ 0.88
Trim28Q62318 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC20.57■□□□□ 0.88
Trim28Q62318 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Trim28Q62318 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.57■□□□□ 0.88
Trim28Q62318 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim28Q62318 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 AC119177.1-201ENSMUST00000227647 1332 ntBASIC20.56■□□□□ 0.88
Trim28Q62318 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Gm14722-201ENSMUST00000118943 689 ntBASIC20.56■□□□□ 0.88
Trim28Q62318 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim28Q62318 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Trim28Q62318 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim28Q62318 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Trim28Q62318 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim28Q62318 Mir3113-201ENSMUST00000175478 76 ntBASIC20.55■□□□□ 0.88
Trim28Q62318 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim28Q62318 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC20.55■□□□□ 0.88
Trim28Q62318 Gm17968-201ENSMUST00000194902 784 ntBASIC20.55■□□□□ 0.88
Trim28Q62318 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim28Q62318 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim28Q62318 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim28Q62318 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trim28Q62318 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim28Q62318 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC20.54■□□□□ 0.88
Trim28Q62318 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim28Q62318 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC20.54■□□□□ 0.88
Trim28Q62318 Gm7787-201ENSMUST00000216858 688 ntBASIC20.54■□□□□ 0.88
Trim28Q62318 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim28Q62318 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim28Q62318 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trim28Q62318 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Trim28Q62318 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms