Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Six1Q62231 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Six1Q62231 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.29■□□□□ 0.2
Six1Q62231 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Six1Q62231 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Six1Q62231 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Six1Q62231 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Gm10013-201ENSMUST00000106074 672 ntBASIC16.28■□□□□ 0.2
Six1Q62231 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.28■□□□□ 0.2
Six1Q62231 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Six1Q62231 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Six1Q62231 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Six1Q62231 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.27■□□□□ 0.2
Six1Q62231 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.27■□□□□ 0.2
Six1Q62231 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.27■□□□□ 0.2
Six1Q62231 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
Six1Q62231 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Gm9013-201ENSMUST00000132939 882 ntBASIC16.27■□□□□ 0.2
Six1Q62231 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.27■□□□□ 0.2
Six1Q62231 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.27■□□□□ 0.2
Six1Q62231 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Six1Q62231 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Six1Q62231 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Six1Q62231 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Six1Q62231 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
Six1Q62231 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Six1Q62231 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Six1Q62231 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Six1Q62231 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Six1Q62231 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.26■□□□□ 0.19
Six1Q62231 Gm6623-201ENSMUST00000173570 544 ntBASIC16.26■□□□□ 0.19
Six1Q62231 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.26■□□□□ 0.19
Six1Q62231 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Six1Q62231 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Six1Q62231 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Six1Q62231 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms