Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.67■□□□□ 0.42
Col11a1Q61245 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Gm8318-201ENSMUST00000182954 872 ntBASIC17.67■□□□□ 0.42
Col11a1Q61245 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col11a1Q61245 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC17.66■□□□□ 0.42
Col11a1Q61245 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC17.66■□□□□ 0.42
Col11a1Q61245 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Col11a1Q61245 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col11a1Q61245 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Col11a1Q61245 Rarb-207ENSMUST00000225921 2756 ntBASIC17.65■□□□□ 0.42
Col11a1Q61245 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col11a1Q61245 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC17.65■□□□□ 0.42
Col11a1Q61245 AC130829.1-201ENSMUST00000221548 494 ntBASIC17.65■□□□□ 0.42
Col11a1Q61245 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col11a1Q61245 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Col11a1Q61245 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
Col11a1Q61245 Gm27306-201ENSMUST00000183970 107 ntBASIC17.65■□□□□ 0.42
Col11a1Q61245 Gm2272-201ENSMUST00000194903 582 ntBASIC17.65■□□□□ 0.42
Col11a1Q61245 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.65■□□□□ 0.42
Col11a1Q61245 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col11a1Q61245 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col11a1Q61245 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col11a1Q61245 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.42
Col11a1Q61245 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC17.64■□□□□ 0.41
Col11a1Q61245 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Col11a1Q61245 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC17.64■□□□□ 0.41
Col11a1Q61245 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Col11a1Q61245 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Col11a1Q61245 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Col11a1Q61245 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col11a1Q61245 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm10499-201ENSMUST00000174094 934 ntBASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.63■□□□□ 0.41
Col11a1Q61245 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col11a1Q61245 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col11a1Q61245 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.62■□□□□ 0.41
Col11a1Q61245 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col11a1Q61245 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC17.62■□□□□ 0.41
Col11a1Q61245 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col11a1Q61245 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col11a1Q61245 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col11a1Q61245 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms