Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Usf1Q61069 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Gm5312-201ENSMUST00000203728 547 ntBASIC14.44□□□□□ -0.1
Usf1Q61069 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Usf1Q61069 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.44□□□□□ -0.1
Usf1Q61069 AC155252.2-201ENSMUST00000226946 680 ntBASIC14.44□□□□□ -0.1
Usf1Q61069 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.44□□□□□ -0.1
Usf1Q61069 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.44□□□□□ -0.1
Usf1Q61069 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.44□□□□□ -0.1
Usf1Q61069 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Usf1Q61069 Gm43702-201ENSMUST00000198772 2546 ntBASIC14.44□□□□□ -0.1
Usf1Q61069 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usf1Q61069 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usf1Q61069 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Gm18489-201ENSMUST00000172565 551 ntBASIC14.43□□□□□ -0.1
Usf1Q61069 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.43□□□□□ -0.1
Usf1Q61069 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC14.43□□□□□ -0.1
Usf1Q61069 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Usf1Q61069 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Zcchc6-207ENSMUST00000225576 2499 ntBASIC14.43□□□□□ -0.1
Usf1Q61069 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
Usf1Q61069 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usf1Q61069 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Usf1Q61069 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usf1Q61069 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Usf1Q61069 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.42□□□□□ -0.1
Usf1Q61069 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.42□□□□□ -0.1
Usf1Q61069 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Gm20949-201ENSMUST00000206478 952 ntBASIC14.42□□□□□ -0.1
Usf1Q61069 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.42□□□□□ -0.1
Usf1Q61069 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Usf1Q61069 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Usf1Q61069 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usf1Q61069 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.42□□□□□ -0.1
Usf1Q61069 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Usf1Q61069 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Usf1Q61069 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.41□□□□□ -0.1
Usf1Q61069 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Gm13365-201ENSMUST00000121188 973 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Gm13597-201ENSMUST00000121239 375 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Gm27301-201ENSMUST00000184012 127 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Gm44335-201ENSMUST00000196879 141 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Gm44297-201ENSMUST00000198304 141 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Gm44346-201ENSMUST00000198851 141 ntBASIC14.41□□□□□ -0.1
Usf1Q61069 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usf1Q61069 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms