Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col17a1Q07563 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC24.31■■□□□ 1.48
Col17a1Q07563 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col17a1Q07563 Gm4875-201ENSMUST00000118257 786 ntBASIC24.31■■□□□ 1.48
Col17a1Q07563 Gm11543-201ENSMUST00000120758 370 ntBASIC24.31■■□□□ 1.48
Col17a1Q07563 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC24.31■■□□□ 1.48
Col17a1Q07563 AC159006.1-201ENSMUST00000226396 258 ntBASIC24.31■■□□□ 1.48
Col17a1Q07563 Gm20445-201ENSMUST00000061905 565 ntBASIC24.31■■□□□ 1.48
Col17a1Q07563 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col17a1Q07563 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC24.3■■□□□ 1.48
Col17a1Q07563 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col17a1Q07563 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col17a1Q07563 Gm5303-201ENSMUST00000117943 1252 ntBASIC24.3■■□□□ 1.48
Col17a1Q07563 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC24.3■■□□□ 1.48
Col17a1Q07563 AC159747.1-201ENSMUST00000219903 265 ntBASIC24.3■■□□□ 1.48
Col17a1Q07563 AC162801.1-201ENSMUST00000220612 198 ntBASIC24.3■■□□□ 1.48
Col17a1Q07563 CT009510.1-201ENSMUST00000227972 270 ntBASIC24.3■■□□□ 1.48
Col17a1Q07563 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col17a1Q07563 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col17a1Q07563 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Col17a1Q07563 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
Col17a1Q07563 Gm17420-201ENSMUST00000164753 153 ntBASIC24.29■■□□□ 1.48
Col17a1Q07563 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC24.29■■□□□ 1.48
Col17a1Q07563 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col17a1Q07563 Gm5898-201ENSMUST00000121016 2071 ntBASIC24.28■■□□□ 1.48
Col17a1Q07563 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col17a1Q07563 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Col17a1Q07563 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.28■■□□□ 1.48
Col17a1Q07563 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC24.28■■□□□ 1.48
Col17a1Q07563 Gm10499-201ENSMUST00000174094 934 ntBASIC24.28■■□□□ 1.48
Col17a1Q07563 Gm7172-201ENSMUST00000218047 1152 ntBASIC24.28■■□□□ 1.48
Col17a1Q07563 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col17a1Q07563 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Col17a1Q07563 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col17a1Q07563 Dmtn-210ENSMUST00000228824 2377 ntBASIC24.27■■□□□ 1.48
Col17a1Q07563 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC24.27■■□□□ 1.48
Col17a1Q07563 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Col17a1Q07563 Gm15236-201ENSMUST00000117309 379 ntBASIC24.27■■□□□ 1.48
Col17a1Q07563 Gm13226-201ENSMUST00000117838 404 ntBASIC24.27■■□□□ 1.48
Col17a1Q07563 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 Snora78-201ENSMUST00000158630 128 ntBASIC24.27■■□□□ 1.48
Col17a1Q07563 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
Col17a1Q07563 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC24.27■■□□□ 1.48
Col17a1Q07563 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 Gm42853-201ENSMUST00000201273 1387 ntBASIC24.27■■□□□ 1.48
Col17a1Q07563 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col17a1Q07563 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Col17a1Q07563 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Col17a1Q07563 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
Col17a1Q07563 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC24.26■■□□□ 1.47
Col17a1Q07563 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm12390-201ENSMUST00000117897 397 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm37424-201ENSMUST00000191727 561 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Gm43703-201ENSMUST00000200523 763 ntBASIC24.26■■□□□ 1.47
Col17a1Q07563 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC24.25■■□□□ 1.47
Col17a1Q07563 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC24.25■■□□□ 1.47
Col17a1Q07563 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC24.25■■□□□ 1.47
Col17a1Q07563 Grk6-206ENSMUST00000224995 2971 ntBASIC24.25■■□□□ 1.47
Col17a1Q07563 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col17a1Q07563 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col17a1Q07563 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Col17a1Q07563 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col17a1Q07563 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC24.24■■□□□ 1.47
Col17a1Q07563 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
Col17a1Q07563 Gm38241-201ENSMUST00000192641 898 ntBASIC24.24■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms