Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Sdc1P18828 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sdc1P18828 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sdc1P18828 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Gm24841-201ENSMUST00000158676 357 ntBASIC13.09□□□□□ -0.31
Sdc1P18828 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 AC159205.3-201ENSMUST00000224614 874 ntBASIC13.09□□□□□ -0.31
Sdc1P18828 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sdc1P18828 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Sdc1P18828 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.09□□□□□ -0.31
Sdc1P18828 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Sdc1P18828 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sdc1P18828 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Sdc1P18828 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.31
Sdc1P18828 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Sdc1P18828 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Sdc1P18828 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.08□□□□□ -0.32
Sdc1P18828 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Gm15847-201ENSMUST00000121417 1065 ntBASIC13.08□□□□□ -0.32
Sdc1P18828 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.08□□□□□ -0.32
Sdc1P18828 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC13.08□□□□□ -0.32
Sdc1P18828 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sdc1P18828 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Gm45560-201ENSMUST00000211492 1472 ntBASIC13.08□□□□□ -0.32
Sdc1P18828 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC13.08□□□□□ -0.32
Sdc1P18828 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sdc1P18828 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
Sdc1P18828 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Sdc1P18828 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Sdc1P18828 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Gm14464-201ENSMUST00000119658 1254 ntBASIC13.07□□□□□ -0.32
Sdc1P18828 Gm37025-201ENSMUST00000195159 829 ntBASIC13.07□□□□□ -0.32
Sdc1P18828 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Gm38327-201ENSMUST00000195852 1755 ntBASIC13.07□□□□□ -0.32
Sdc1P18828 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC13.07□□□□□ -0.32
Sdc1P18828 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sdc1P18828 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC13.06□□□□□ -0.32
Sdc1P18828 Sorbs3-204ENSMUST00000227929 2460 ntBASIC13.06□□□□□ -0.32
Sdc1P18828 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sdc1P18828 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sdc1P18828 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms