Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Chmp6P0C0A3 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Gm36967-201ENSMUST00000193814 266 ntBASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp6P0C0A3 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Gm18669-201ENSMUST00000216049 778 ntBASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp6P0C0A3 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Gm27357-201ENSMUST00000183754 135 ntBASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Chmp6P0C0A3 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp6P0C0A3 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms