Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm44313-201ENSMUST00000198018 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44486-201ENSMUST00000198508 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44314-201ENSMUST00000199263 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44394-201ENSMUST00000199558 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44484-201ENSMUST00000199873 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44466-201ENSMUST00000200264 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44359-201ENSMUST00000200671 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 AC161829.1-201ENSMUST00000220298 281 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm18856-201ENSMUST00000178096 1374 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm13216-201ENSMUST00000117145 591 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm8349-201ENSMUST00000182720 1003 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 Mir6404-201ENSMUST00000183699 94 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Hoxd3P09027 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm6296-201ENSMUST00000222599 943 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Vti1a-206ENSMUST00000225529 1244 ntBASIC12.34□□□□□ -0.43
Hoxd3P09027 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
Hoxd3P09027 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Hoxd3P09027 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Hoxd3P09027 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Hoxd3P09027 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Gm18733-201ENSMUST00000173950 856 ntBASIC12.33□□□□□ -0.44
Hoxd3P09027 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC12.33□□□□□ -0.44
Hoxd3P09027 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Hoxd3P09027 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC12.32□□□□□ -0.44
Hoxd3P09027 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Hoxd3P09027 Gm4459-201ENSMUST00000118750 468 ntBASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms