Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.86■□□□□ 0.61
Col3a1P08121 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col3a1P08121 Gm14722-201ENSMUST00000118943 689 ntBASIC18.86■□□□□ 0.61
Col3a1P08121 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.86■□□□□ 0.61
Col3a1P08121 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col3a1P08121 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC18.86■□□□□ 0.61
Col3a1P08121 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC18.86■□□□□ 0.61
Col3a1P08121 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col3a1P08121 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC18.85■□□□□ 0.61
Col3a1P08121 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.85■□□□□ 0.61
Col3a1P08121 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.85■□□□□ 0.61
Col3a1P08121 Auts2-212ENSMUST00000178555 309 ntBASIC18.85■□□□□ 0.61
Col3a1P08121 Gm5648-201ENSMUST00000122244 1587 ntBASIC18.85■□□□□ 0.61
Col3a1P08121 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col3a1P08121 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.85■□□□□ 0.61
Col3a1P08121 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col3a1P08121 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC18.84■□□□□ 0.61
Col3a1P08121 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 AC151286.1-201ENSMUST00000198489 145 ntBASIC18.84■□□□□ 0.61
Col3a1P08121 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.84■□□□□ 0.61
Col3a1P08121 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col3a1P08121 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col3a1P08121 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col3a1P08121 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC18.84■□□□□ 0.61
Col3a1P08121 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC18.84■□□□□ 0.61
Col3a1P08121 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC18.84■□□□□ 0.61
Col3a1P08121 Gm45747-201ENSMUST00000212203 999 ntBASIC18.84■□□□□ 0.61
Col3a1P08121 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC18.84■□□□□ 0.61
Col3a1P08121 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col3a1P08121 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col3a1P08121 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col3a1P08121 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col3a1P08121 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col3a1P08121 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.83■□□□□ 0.6
Col3a1P08121 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col3a1P08121 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col3a1P08121 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Col3a1P08121 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col3a1P08121 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Col3a1P08121 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.82■□□□□ 0.6
Col3a1P08121 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Col3a1P08121 Gm8318-201ENSMUST00000182954 872 ntBASIC18.82■□□□□ 0.6
Col3a1P08121 Gm45612-201ENSMUST00000211320 160 ntBASIC18.82■□□□□ 0.6
Col3a1P08121 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.82■□□□□ 0.6
Col3a1P08121 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col3a1P08121 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.81■□□□□ 0.6
Col3a1P08121 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col3a1P08121 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms