Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Dio3-201ENSMUST00000097228 1449 ntBASIC13.22□□□□□ -0.29
Hmgb3O54879 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC13.22□□□□□ -0.29
Hmgb3O54879 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Gm12896-201ENSMUST00000118430 226 ntBASIC13.22□□□□□ -0.29
Hmgb3O54879 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC13.22□□□□□ -0.29
Hmgb3O54879 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Gm43859-201ENSMUST00000200075 1412 ntBASIC13.22□□□□□ -0.29
Hmgb3O54879 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hmgb3O54879 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Gm21596-201ENSMUST00000178049 1316 ntBASIC13.21□□□□□ -0.29
Hmgb3O54879 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Wnt10b-204ENSMUST00000226655 1807 ntBASIC13.21□□□□□ -0.29
Hmgb3O54879 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Hmgb3O54879 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Hmgb3O54879 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Hmgb3O54879 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Hmgb3O54879 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Hmgb3O54879 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Hmgb3O54879 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Hmgb3O54879 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
Hmgb3O54879 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Gm17661-201ENSMUST00000170317 270 ntBASIC13.2□□□□□ -0.3
Hmgb3O54879 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Hmgb3O54879 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Hmgb3O54879 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms