Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trav11A0A0B4J1J9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trav11A0A0B4J1J9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Gm43863-201ENSMUST00000203822 1192 ntBASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trav11A0A0B4J1J9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.1
Trav11A0A0B4J1J9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trav11A0A0B4J1J9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Trav11A0A0B4J1J9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trav11A0A0B4J1J9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trav11A0A0B4J1J9 AC124392.1-201ENSMUST00000225172 5324 ntBASIC15.69■□□□□ 0.1
Trav11A0A0B4J1J9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav11A0A0B4J1J9 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
Trav11A0A0B4J1J9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trav11A0A0B4J1J9 AC157572.2-201ENSMUST00000226970 908 ntBASIC15.68■□□□□ 0.1
Trav11A0A0B4J1J9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC15.68■□□□□ 0.1
Trav11A0A0B4J1J9 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trav11A0A0B4J1J9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trav11A0A0B4J1J9 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Trav11A0A0B4J1J9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC15.67■□□□□ 0.1
Trav11A0A0B4J1J9 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trav11A0A0B4J1J9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Gm37847-201ENSMUST00000192163 1497 ntBASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Gm31748-201ENSMUST00000194938 1497 ntBASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trav11A0A0B4J1J9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trav11A0A0B4J1J9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav11A0A0B4J1J9 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav11A0A0B4J1J9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav11A0A0B4J1J9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC15.64■□□□□ 0.09
Trav11A0A0B4J1J9 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trav11A0A0B4J1J9 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trav11A0A0B4J1J9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trav11A0A0B4J1J9 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trav11A0A0B4J1J9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav11A0A0B4J1J9 Particl-201ENSMUST00000205370 1560 ntBASIC15.6■□□□□ 0.09
Trav11A0A0B4J1J9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav11A0A0B4J1J9 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav11A0A0B4J1J9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav11A0A0B4J1J9 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav11A0A0B4J1J9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav11A0A0B4J1J9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Gm30023-201ENSMUST00000197970 889 ntBASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav11A0A0B4J1J9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC15.57■□□□□ 0.08
Trav11A0A0B4J1J9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC15.57■□□□□ 0.08
Trav11A0A0B4J1J9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav11A0A0B4J1J9 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav11A0A0B4J1J9 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms