Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv5A0A0B4J1G9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trbv5A0A0B4J1G9 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trbv5A0A0B4J1G9 Gm8109-201ENSMUST00000194076 746 ntBASIC18.47■□□□□ 0.55
Trbv5A0A0B4J1G9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trbv5A0A0B4J1G9 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv5A0A0B4J1G9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Trbv5A0A0B4J1G9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv5A0A0B4J1G9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.46■□□□□ 0.55
Trbv5A0A0B4J1G9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv5A0A0B4J1G9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv5A0A0B4J1G9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.45■□□□□ 0.54
Trbv5A0A0B4J1G9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv5A0A0B4J1G9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv5A0A0B4J1G9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv5A0A0B4J1G9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv5A0A0B4J1G9 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Trbv5A0A0B4J1G9 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv5A0A0B4J1G9 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv5A0A0B4J1G9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv5A0A0B4J1G9 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Trbv5A0A0B4J1G9 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv5A0A0B4J1G9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv5A0A0B4J1G9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Trbv5A0A0B4J1G9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv5A0A0B4J1G9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trbv5A0A0B4J1G9 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv5A0A0B4J1G9 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trbv5A0A0B4J1G9 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.4■□□□□ 0.54
Trbv5A0A0B4J1G9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv5A0A0B4J1G9 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv5A0A0B4J1G9 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv5A0A0B4J1G9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.38■□□□□ 0.53
Trbv5A0A0B4J1G9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trbv5A0A0B4J1G9 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv5A0A0B4J1G9 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv5A0A0B4J1G9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv5A0A0B4J1G9 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv5A0A0B4J1G9 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv5A0A0B4J1G9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv5A0A0B4J1G9 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv5A0A0B4J1G9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv5A0A0B4J1G9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv5A0A0B4J1G9 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.34■□□□□ 0.53
Trbv5A0A0B4J1G9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.34■□□□□ 0.53
Trbv5A0A0B4J1G9 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv5A0A0B4J1G9 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv5A0A0B4J1G9 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv5A0A0B4J1G9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Trbv5A0A0B4J1G9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv5A0A0B4J1G9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv5A0A0B4J1G9 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.33■□□□□ 0.52
Trbv5A0A0B4J1G9 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.33■□□□□ 0.52
Trbv5A0A0B4J1G9 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv5A0A0B4J1G9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv5A0A0B4J1G9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trbv5A0A0B4J1G9 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv5A0A0B4J1G9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC18.31■□□□□ 0.52
Trbv5A0A0B4J1G9 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.3■□□□□ 0.52
Trbv5A0A0B4J1G9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.29■□□□□ 0.52
Trbv5A0A0B4J1G9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms