RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SLC35G6P0C7Q6 338 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 NT5EP21589 574 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 UBXN11Q5T124 520 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 TPGS2Q68CL5 300 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 ERMP1Q7Z2K6 904 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 RBM23Q86U06 439 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 CPA6Q8N4T0 437 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SMG8Q8ND04 991 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 OR9I1Q8NGQ6 314 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 C9orf43Q8TAL5 461 aaPredicted RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 PYCR2Q96C36 320 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 KCNN2Q9H2S1 579 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SUV39H2Q9H5I1 410 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 MSRAQ9UJ68 235 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 A0A1W2PRB8 838 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 EFCAB9A8MZ26 197 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 TOR1BO14657 336 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 STX16O14662 325 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 FAM189A1O60320 539 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PAPSS2O95340 614 aaPredicted RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 DNAJA1P31689 397 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 PSMD8P48556 350 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 TMEM44Q2T9K0 475 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ZNF311Q5JNZ3 666 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SLC25A24Q6NUK1 477 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 RNF19BQ6ZMZ0 732 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 OSTM1Q86WC4 334 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SLC30A8Q8IWU4 369 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ZNF433Q8N7K0 673 aaPredicted RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 ZNF563Q8TA94 476 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 TMBIM1Q969X1 311 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 KIAA1191Q96A73 305 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SMOQ99835 787 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 XYLT2Q9H1B5 865 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ANKRD66B4E2M5 251 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PGRP06401 933 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 CSKP41240 450 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 DGKQP52824 942 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 MVKQ03426 396 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 CBX3Q13185 183 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SERINC3Q13530 473 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 MOGSQ13724 837 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 DSC3Q14574 896 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SUZ12Q15022 739 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 TOMM20Q15388 145 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PLEKHG6Q3KR16 790 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 IQCCQ4KMZ1 466 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-201ENST00000263398 LCN1P1Q5VSP4 162 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 FRG2Q64ET8 278 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PSRC1Q6PGN9 363 aaPredicted RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 FAM124AQ86V42 546 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PDSS2Q86YH6 399 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ZMIZ2Q8NF64 920 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 KAT2AQ92830 837 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PPP1R14BQ96C90 147 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SLC35G5Q96KT7 338 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ZNF354BQ96LW1 612 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 FRG2BQ96QU4 278 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 TLE6Q9H808 572 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ELL3Q9HB65 397 aaPredicted RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 AMBNQ9NP70 447 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ABCB8Q9NUT2 735 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 FBXL21Q9UKT6 434 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 ASB3Q9Y575 518 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 BAZ2AQ9UIF9 1905 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 AGRPO00253 132 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 CDC7O00311 574 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PITPNM1O00562 1244 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PDPK1O15530 556 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 EPOP01588 193 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 C8AP07357 584 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 F7P08709 466 aaPredicted RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 CD36P16671 472 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 PTPN2P17706 415 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 MXD1Q05195 221 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 CARTPTQ16568 116 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 KLHL22Q53GT1 634 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 OR2T5Q6IEZ7 315 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 CXorf57Q6NSI4 855 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 GPR135Q8IZ08 494 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 OR10G2Q8NGC3 310 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 OR2T29Q8NH02 315 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SNX33Q8WV41 574 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 SLC29A3Q9BZD2 475 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 POLR2J2Q9GZM3 115 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 GPR88Q9GZN0 384 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 GKN1Q9NS71 199 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 FLRT1Q9NZU1 646 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 DHRS7Q9Y394 339 aa10.54□□□□□ -0.72
CD44-201ENST00000263398 RPL36Q9Y3U8 105 aaKnown RBP10.54□□□□□ -0.72
CD44-201ENST00000263398 PRORSD1PA6NEY8 169 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 FGF3P11487 239 aaPredicted RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 DGKGP49619 791 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 STARP49675 285 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 STC1P52823 247 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 CDH15P55291 814 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 STXBP1P61764 594 aaKnown RBP10.53□□□□□ -0.72
CD44-201ENST00000263398 RAPSNQ13702 412 aa10.53□□□□□ -0.72
CD44-201ENST00000263398 NPTX1Q15818 432 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms