RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 TTC23LQ6PF05 361 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 RPS27LQ71UM5 84 aaKnown RBP17.12■□□□□ 0.33
UPF3A-206ENST00000480362 TAF8Q7Z7C8 310 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 PIGKQ92643 395 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 CNDP1Q96KN2 507 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 CCDC138Q96M89 665 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 FERD3LQ96RJ6 166 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 EPN3Q9H201 632 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 IMP3Q9NV31 184 aaKnown RBP17.12■□□□□ 0.33
UPF3A-206ENST00000480362 THAP1Q9NVV9 213 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 SCHIP1Q9P0W5 487 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-206ENST00000480362 CIDEBQ9UHD4 219 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 PCOLCE2Q9UKZ9 415 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 PCDHGA2Q9Y5H1 932 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 TNPO3Q9Y5L0 923 aaKnown RBP17.12■□□□□ 0.33
UPF3A-206ENST00000480362 NCOR1O75376 2440 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 TNRC6BQ9UPQ9 1833 aaKnown RBP17.12■□□□□ 0.33
UPF3A-206ENST00000480362 KMT2EQ8IZD2 1858 aa17.12■□□□□ 0.33
UPF3A-206ENST00000480362 RPN2P04844 631 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 ARRB2P32121 409 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 CCR10P46092 362 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 HSPA7P48741 367 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 HNMTP50135 292 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 PRKG2Q13237 762 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 RCN2Q14257 317 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 PCBP2Q15366 365 aaKnown RBP eCLIP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 RPE65Q16518 533 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 DUS1LQ6P1R4 473 aaKnown RBP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 ATG14Q6ZNE5 492 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 PRR23BQ6ZRT6 265 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 SYT12Q8IV01 421 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TBC1D21Q8IYX1 336 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TCAIMQ8N3R3 496 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 OR9A1PQ8NGU1 263 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 OR5K2Q8NHB8 316 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 PPP4R1Q8TF05 950 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 RAD51AP1Q96B01 352 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 FBXL8Q96CD0 374 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TMEM79Q9BSE2 394 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 LRRC61Q9BV99 259 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 C1QTNF3Q9BXJ4 246 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 COL25A1Q9BXS0 654 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 DRC3Q9H069 523 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TRIT1Q9H3H1 467 aaKnown RBP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 GSTO2Q9H4Y5 243 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 FGFR1OP2Q9NVK5 253 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TAAR2Q9P1P5 351 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 TDRKHQ9Y2W6 561 aaKnown RBP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 ASB1Q9Y576 335 aa17.11■□□□□ 0.33
UPF3A-206ENST00000480362 ZFC3H1O60293 1989 aaKnown RBP17.11■□□□□ 0.33
UPF3A-206ENST00000480362 ANKRD12Q6UB98 2062 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 TRBV23OR9-2A0A075B6M9 112 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 A6NCN8 305 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 OR52A4PA6NMU1 304 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 SRRM3A6NNA2 597 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 PRR33A8MZF0 331 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 MYO1CO00159 1063 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 EDF1O60869 148 aaKnown RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 HSPA4LO95757 839 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 RPS17P08708 135 aaKnown RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 GGT5P36269 586 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 SERPINB5P36952 375 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 CTSKP43235 329 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 CDH13P55290 713 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 OCRLQ01968 901 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 GRB7Q14451 532 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 KRT33BQ14525 404 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 ZXDCQ2QGD7 858 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 KIF19Q2TAC6 998 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 ARL13AQ5H913 290 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 PEAR1Q5VY43 1037 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 DCUN1D3Q8IWE4 304 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 LSMEM2Q8N112 164 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 LMX1AQ8TE12 382 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 UBTD2Q8WUN7 234 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 ATL1Q8WXF7 558 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 PITPNM3Q9BZ71 974 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 CD244Q9BZW8 370 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 RABEP2Q9H5N1 569 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 PSD3Q9NYI0 1048 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 STOX2Q9P2F5 926 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-206ENST00000480362 SPASTQ9UBP0 616 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 PCTPQ9UKL6 214 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 SNX11Q9Y5W9 270 aa17.1■□□□□ 0.33
UPF3A-206ENST00000480362 CCNT2O60583 730 aaKnown RBP17.09■□□□□ 0.33
UPF3A-206ENST00000480362 STK16O75716 305 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 MTHFD1P11586 935 aaKnown RBP17.09■□□□□ 0.33
UPF3A-206ENST00000480362 F3P13726 295 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 TSPAN8P19075 237 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 DRD4P21917 467 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 IMPA1P29218 277 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 GDF5P43026 501 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 NUBP1P53384 320 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 NAA20P61599 178 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 HNRNPKP61978 463 aaKnown RBP eCLIP17.09■□□□□ 0.33
UPF3A-206ENST00000480362 BNC1Q01954 994 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 ELOCQ15369 112 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 AGTRAPQ6RW13 159 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 FRMD7Q6ZUT3 714 aa17.09■□□□□ 0.33
UPF3A-206ENST00000480362 CPLX4Q7Z7G2 160 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms