RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CIDEBQ9UHD4 219 aa17.61■□□□□ 0.41
SDC1-203ENST00000403076 ZFC3H1O60293 1989 aaKnown RBP17.61■□□□□ 0.41
SDC1-203ENST00000403076 KIR2DS5A0A0G2JLQ3 304 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 A0A0G2JNG1 304 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 KIR2DS3K7RE56 304 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 VIPP01282 170 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 NEFHP12036 1026 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 BIRC2Q13490 618 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 KIR2DS5Q14953 304 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 PPP1R3AQ16821 1122 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 GATAD2AQ86YP4 633 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 NAGSQ8N159 534 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 SLC25A45Q8N413 288 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 OR5K2Q8NHB8 316 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 HGH1Q9BTY7 390 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 RDH14Q9HBH5 336 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 NUDT4Q9NZJ9 180 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 SIRPGQ9P1W8 387 aa17.6■□□□□ 0.41
SDC1-203ENST00000403076 WDR91A4D1P6 747 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 LMNAP02545 664 aaKnown RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 ANXA5P08758 320 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 SBK3P0C264 359 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 CHN1P15882 459 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 XRCC1P18887 633 aaPredicted RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 NDUFS1P28331 727 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 NBL1P41271 181 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 SLC19A1P41440 591 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 AP1S2P56377 157 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 PFKFB4Q16877 469 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 ZYG11AQ6WRX3 759 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 FBXO39Q8N4B4 442 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 TMEM151AQ8N4L1 468 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 MINDY1Q8N5J2 469 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 MAPK15Q8TD08 544 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 DYDC1Q8WWB3 177 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 SREK1Q8WXA9 508 aaKnown RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 CCDC138Q96M89 665 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 CAMK1GQ96NX5 476 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 INTS9Q9NV88 658 aaKnown RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 ZNF624Q9P2J8 865 aaPredicted RBP17.59■□□□□ 0.41
SDC1-203ENST00000403076 COPG2Q9UBF2 871 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 POLG2Q9UHN1 485 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 TMCO1Q9UM00 188 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 TMEM131Q92545 1883 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 GPR179Q6PRD1 2367 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 ADAMTS9Q9P2N4 1935 aa17.59■□□□□ 0.41
SDC1-203ENST00000403076 TARM1B6A8C7 271 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 KDM1AO60341 852 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 DLX3O60479 287 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 ZNF806P0C7X5 589 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 ALPPL2P10696 532 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 KCNA4P22459 653 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 ATP5F1P24539 256 aaPredicted RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 ETV4P43268 484 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 SERPINB4P48594 390 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 WDR4P57081 412 aaKnown RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 SPEM2Q0P670 501 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 CCSMST1Q4G0I0 132 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 MBOAT1Q6ZNC8 495 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 MTERF4Q7Z6M4 381 aaKnown RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 RAB44Q7Z6P3 723 aaPredicted RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 SLC9B2Q86UD5 537 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 RASGRP3Q8IV61 690 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 NUDCD3Q8IVD9 361 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 SFTPA2Q8IWL1 248 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 FBXO15Q8NCQ5 510 aaPredicted RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 OR9A1PQ8NGU1 263 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 SLC37A2Q8TED4 501 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 SAP25Q8TEE9 199 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 PHF21BQ96EK2 531 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 PKP4Q99569 1192 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 STN1Q9H668 368 aaKnown RBP17.58■□□□□ 0.41
SDC1-203ENST00000403076 CPNE7Q9UBL6 633 aa17.58■□□□□ 0.41
SDC1-203ENST00000403076 ARHGEF17Q96PE2 2063 aaPredicted RBP17.58■□□□□ 0.4
SDC1-203ENST00000403076 CABIN1Q9Y6J0 2220 aa17.58■□□□□ 0.4
SDC1-203ENST00000403076 ANKRD12Q6UB98 2062 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 KRT87PA6NCN2 255 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 G3V2L1 256 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 MTHFD2P13995 350 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 CDKL1Q00532 357 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 SF3A2Q15428 464 aaKnown RBP17.57■□□□□ 0.4
SDC1-203ENST00000403076 SLC22A9Q8IVM8 553 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 SFRP1Q8N474 314 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 RAB42Q8N4Z0 105 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 PTGR2Q8N8N7 351 aaPredicted RBP17.57■□□□□ 0.4
SDC1-203ENST00000403076 PPP1R14CQ8TAE6 165 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 CCDC126Q96EE4 140 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 WWOXQ9NZC7 414 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 NCKIPSDQ9NZQ3 722 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 LNPEPQ9UIQ6 1025 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 PLAGL1Q9UM63 463 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 PRAMEF33A0A0G2JMD5 474 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 A8MT66 165 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 BPGMP07738 259 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 ALDH3A1P30838 453 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 MAZP56270 477 aaKnown RBP17.57■□□□□ 0.4
SDC1-203ENST00000403076 ASPHQ12797 758 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 PCLAFQ15004 111 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 CDKL4Q5MAI5 379 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms