RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SLC24A2Q9UI40 661 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 NFU1Q9UMS0 254 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 DUX1O43812 170 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 CSO75390 466 aaKnown RBP16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 PIAS1O75925 651 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 UBXN7O94888 489 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 C1QAP02745 245 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 CSF2RBP32927 897 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 KRT33BQ14525 404 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 GBX1Q14549 363 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 MAP9Q49MG5 647 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 TEX35Q5T0J7 233 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 CCNI2Q6ZMN8 369 aaPredicted RBP16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 B3GNT8Q7Z7M8 397 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 PIM3Q86V86 326 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 SLC26A11Q86WA9 606 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 ZBTB2Q8N680 514 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 GIMAP7Q8NHV1 300 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 AHCYL2Q96HN2 611 aaKnown RBP16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 FERD3LQ96RJ6 166 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 NDNQ99608 321 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 SLC30A3Q99726 388 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 EPB41L1Q9H4G0 881 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 MVB12BQ9H7P6 319 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 OGFRQ9NZT2 677 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 ANGPTL2Q9UKU9 493 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 MSRB2Q9Y3D2 182 aa16.13■□□□□ 0.17
CCDC28A-202ENST00000611852 CXorf49A8MYA2 514 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 SPAG6O75602 509 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 HOXB3P14651 431 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 MAPK9P45984 424 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 TIAL1Q01085 375 aaKnown RBP eCLIP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 FOXK2Q01167 660 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 KYNUQ16719 465 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 RBM20Q5T481 1227 aaKnown RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 ZNF574Q6ZN55 896 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 STRA8Q7Z7C7 330 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 SLITRK4Q8IW52 837 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 SIDT2Q8NBJ9 832 aaKnown RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 JPH3Q8WXH2 748 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 CDKL2Q92772 493 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 GPR21Q99679 349 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 NSMCE4AQ9NXX6 385 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 KLHL42Q9P2K6 505 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 CORO1CQ9ULV4 474 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 ASF1AQ9Y294 204 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 ENTPD2Q9Y5L3 495 aa16.12■□□□□ 0.17
CCDC28A-202ENST00000611852 FAM159BA6NKW6 160 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 VPS26AO75436 327 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 PROS1P07225 676 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 TYRP1P17643 537 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ATP5DP30049 168 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 PPM1FP49593 454 aaPredicted RBP16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ZFP36L1Q07352 338 aaKnown RBP16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ABRQ12979 859 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 CAMK2BQ13554 666 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 PLCL1Q15111 1095 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ACSBG2Q5FVE4 666 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 WDR74Q6RFH5 385 aaPredicted RBP16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ZC3HC1Q86WB0 502 aaKnown RBP16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 SPNS2Q8IVW8 549 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 ACVR1CQ8NER5 493 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 OR4D9Q8NGE8 314 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 OR5AR1Q8NGP9 310 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 OR5K2Q8NHB8 316 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 CD200R1Q8TD46 325 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 NCSTNQ92542 709 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 RSC1A1Q92681 617 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 DPYSL5Q9BPU6 564 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 MCMBPQ9BTE3 642 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 HGH1Q9BTY7 390 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 NINJ2Q9NZG7 142 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 TMEM9Q9P0T7 183 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 DHRS7Q9Y394 339 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 CEP295Q9C0D2 2601 aa16.11■□□□□ 0.17
CCDC28A-202ENST00000611852 AMD1P17707 334 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 CCKBRP32239 447 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 STX2P32856 288 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 CAPZBP47756 277 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 INHBCP55103 352 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 CDKN2DP55273 166 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 PRKG2Q13237 762 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 KBTBD12Q3ZCT8 623 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 TMEM71Q6P5X7 295 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 UNC5DQ6UXZ4 953 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 TBC1D21Q8IYX1 336 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 GPATCH11Q8N954 259 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 FBF1Q8TES7 1133 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 GRAMD1AQ96CP6 724 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 ATXN7L3BQ96GX2 97 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 TMEM74Q96NL1 305 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 TRIT1Q9H3H1 467 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 CDC42EP4Q9H3Q1 356 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 SEMA6CQ9H3T2 930 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 TAS2R13Q9NYV9 303 aa16.1■□□□□ 0.17
CCDC28A-202ENST00000611852 IGHV5-10-1A0A0J9YXX1 117 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 SLU7O95391 586 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 CD9P21926 228 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 LIMK2P53671 638 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 TTLL9Q3SXZ7 439 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms