RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CPA6Q8N4T0 437 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 POGLUT1Q8NBL1 392 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 HSD17B11Q8NBQ5 300 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 OR8H1Q8NGG4 311 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 OR8S1Q8NH09 359 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FAM110BQ8TC76 370 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 COPS5Q92905 334 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MR1Q95460 341 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GLYATL1Q969I3 302 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TXNDC15Q96J42 360 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FOXN4Q96NZ1 517 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 KLF6Q99612 283 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NDC1Q9BTX1 674 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ADGRL1O94910 1474 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF705EA8MWA4 302 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 BTN3A1O00481 513 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SLC31A1O15431 190 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 LRIG2O94898 1065 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 IFNA17P01571 189 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PDHBP11177 359 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ADH7P40394 386 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PIK3CBP42338 1070 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SSR2P43308 183 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 KCNC1P48547 511 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CHRNDQ07001 517 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 LIPMQ5VYY2 423 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CARD17Q5XLA6 110 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SPESP1Q6UW49 350 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP49Q70CQ1 688 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMED4Q7Z7H5 227 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PDPRQ8NCN5 879 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ITFG1Q8TB96 612 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 HMGB4Q8WW32 186 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 UBE2E3Q969T4 207 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CPNE2Q96FN4 548 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TTYH2Q9BSA4 534 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 LGR4Q9BXB1 951 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RTFDC1Q9BY42 306 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FAM234AQ9H0X4 552 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 VCPKMTQ9H867 229 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ATP13A1Q9HD20 1204 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GDF3Q9NR23 364 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RLIMQ9NVW2 624 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM248Q9NWD8 314 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 KLQ9UEF7 1012 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 HAO1Q9UJM8 370 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PLB1Q6P1J6 1458 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 EIF2AK4Q9P2K8 1649 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TTLL8A6PVC2 850 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NPIPA5E9PKD4 350 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 H7BYZ3 331 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SNAP91O60641 907 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CYP1A1P04798 512 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CD2P06729 351 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CYP4B1P13584 511 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SLC6A2P23975 617 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GLP1RP43220 463 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DGKQP52824 942 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 HOXA4Q00056 320 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ARHGAP19Q14CB8 494 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SEC23BQ15437 767 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GUK1Q16774 197 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RBM48Q5RL73 367 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 METTL7BQ6UX53 244 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMPRSS11AQ6ZMR5 421 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PRICKLE2Q7Z3G6 844 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM126BQ8IUX1 230 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TDRD5Q8NAT2 981 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM104Q8NE00 496 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 M1APQ8TC57 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ADAMTS15Q8TE58 950 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ATG4AQ8WYN0 398 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CPB2Q96IY4 423 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MTERF1Q99551 399 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RAB11FIP5Q9BXF6 653 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM59Q9BXS4 323 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MOB1AQ9H8S9 216 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF286AQ9HBT8 521 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GBA2Q9HCG7 927 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NPIPA1Q9UND3 350 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SSUH2Q9Y2M2 353 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 HEBP2Q9Y5Z4 205 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RNASET2O00584 256 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 OR7A17O14581 309 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ABCB7O75027 752 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ENTPD5O75356 428 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MMP3P08254 477 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TPBGLP0DKB5 382 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FASP25445 335 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SERPINB9P50453 376 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RENBPP51606 427 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CDK3Q00526 305 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TRIM28Q13263 835 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RAB31Q13636 194 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NCOA4Q13772 614 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ARMC12Q5T9G4 340 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 XKR5Q6UX68 686 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMPRSS11FQ6ZWK6 438 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms