RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 EOGTQ5NDL2 527 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 FAM219BQ5XKK7 198 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 SKA2Q8WVK7 121 aaPredicted RBP16.55■□□□□ 0.24
CLN3-252ENST00000636907 SIPA1Q96FS4 1042 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 COX14Q96I36 57 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 HIC2Q96JB3 615 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 OR52B2Q96RD2 323 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 OSBPL6Q9BZF3 934 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 ACTR5Q9H9F9 607 aaPredicted RBP16.55■□□□□ 0.24
CLN3-252ENST00000636907 RDH14Q9HBH5 336 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 SEMA4BQ9NPR2 832 aaPredicted RBP16.55■□□□□ 0.24
CLN3-252ENST00000636907 EIF2B4Q9UI10 523 aaKnown RBP16.55■□□□□ 0.24
CLN3-252ENST00000636907 SCML1Q9UN30 329 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 TRAF6Q9Y4K3 522 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 TAPBPO15533 448 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 CCDC22O60826 627 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 SLCO2B1O94956 709 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 SERPINA6P08185 405 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 VCLP18206 1134 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 ADPRHP54922 357 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 CORO7P57737 925 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 RPS21P63220 83 aaKnown RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 LCP2Q13094 533 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 FGL2Q14314 439 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 TTC31Q49AM3 519 aaPredicted RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 NEK10Q6ZWH5 1172 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 HEATR4Q86WZ0 1026 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 LILRA3Q8N6C8 439 aaPredicted RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 KLK6Q92876 244 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 FAR2Q96K12 515 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 WDR55Q9H6Y2 383 aaPredicted RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 ZBTB26Q9HCK0 441 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 MID1IP1Q9NPA3 183 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 MBNL1Q9NR56 388 aaKnown RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 ARMCX1Q9P291 453 aa16.54■□□□□ 0.24
CLN3-252ENST00000636907 NDRG2Q9UN36 371 aaKnown RBP16.54■□□□□ 0.24
CLN3-252ENST00000636907 TRPM6Q9BX84 2022 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 GOLGA8QA0A0J9YX86 632 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 A0A1W2PQU0 124 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 SLC5A10A0PJK1 596 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 GOLGA8OA6NCC3 632 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 GOLGA8NF8WBI6 632 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 E2F3O00716 465 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PAK4O96013 591 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 C8GP07360 202 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 C7P10643 843 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 ZNF8P17098 575 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 TARSP26639 723 aaKnown RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 EPHA3P29320 983 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PBLDP30039 288 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 NAA20P61599 178 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 NCALDP61601 193 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 GTF2H3Q13889 308 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 IRF4Q15306 451 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PCBP2Q15366 365 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-252ENST00000636907 ZNF658BQ4V348 819 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 SYTL3Q4VX76 610 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 FAM91A1Q658Y4 838 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 CLEC6AQ6EIG7 209 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 KIAA1161Q6NSJ0 714 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 UBE2R2Q712K3 238 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 TRAPPC5Q8IUR0 188 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 AFAP1L2Q8N4X5 818 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TP53I13Q8NBR0 393 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 AGAP11Q8TF27 550 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 ASB11Q8WXH4 323 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 MRGPRX1Q96LB2 322 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 EGFL8Q99944 293 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 SLC12A9Q9BXP2 914 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TCF7L2Q9NQB0 619 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PTBP2Q9UKA9 531 aaKnown RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 MMP17Q9ULZ9 603 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PDE10AQ9Y233 779 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TMEM98Q9Y2Y6 226 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 ANKRD12Q6UB98 2062 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PRUNE2Q8WUY3 3088 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 A0A1B0GTL3 188 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 VEGFDO43915 354 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 RNGTTO60942 597 aaKnown RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 SKAP2O75563 359 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 CBX6O95503 412 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 T-ENOLP0DO92 83 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 NDUFV2P19404 249 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 PREPP48147 710 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 CDK3Q00526 305 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 BTKQ06187 659 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 ACTN3Q08043 901 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 UBAP2LQ14157 1087 aaKnown RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 MLF2Q15773 248 aaPredicted RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 TMEM259Q4ZIN3 620 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 MBOAT1Q6ZNC8 495 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 STON2Q8WXE9 905 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 GLMNQ92990 594 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TMEM159Q96B96 161 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 RHBDF1Q96CC6 855 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TMEM79Q9BSE2 394 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 HGH1Q9BTY7 390 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 C1QTNF2Q9BXJ5 285 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 CD93Q9NPY3 652 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 SAR1AQ9NR31 198 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms