RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 AKTIPQ9H8T0 292 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ERVMER34-1Q9H9K5 563 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 JMJD4Q9H9V9 463 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RXFP1Q9HBX9 757 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 IL1RAPL2Q9NP60 686 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RAB20Q9NX57 234 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 DUSP13Q9UII6 198 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ANAPC2Q9UJX6 822 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FEM1BQ9UK73 627 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NUP50Q9UKX7 468 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 MAD1L1Q9Y6D9 718 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 MYH3P11055 1940 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 DUOX1Q9NRD9 1551 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PDS5AQ29RF7 1337 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 A0A1W2PPC4 97 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM234BA2RU67 622 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 EFCAB10A6NFE3 127 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF233A6NK53 670 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ADM5C9JUS6 153 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TAF4O00268 1085 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CLDN4O14493 209 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GNB5O14775 395 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC22A1O15245 554 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CD3EAPO15446 510 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NUPL2O15504 423 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TMEM63AO94886 807 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 MFN2O95140 757 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GDF11O95390 407 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 DIRAS3O95661 229 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 IGHEP01854 428 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 LIPFP07098 398 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 UBTFL1P0CB47 393 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RAB4AP20338 218 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NR2F2P24468 414 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SERPINB1P30740 379 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SDHAP31040 664 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SPAM1P38567 509 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TXKP42681 527 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GPD2P43304 727 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 BCAP31P51572 246 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CCR5P51681 352 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 HNRNPFP52597 415 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RAD23AP54725 363 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RAB4BP61018 213 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PSMC6P62333 389 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ECT2LQ008S8 904 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CREMQ03060 361 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NAB1Q13506 487 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TRA2AQ13595 282 aaKnown RBP eCLIP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 THOC5Q13769 683 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FGL2Q14314 439 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PRKD1Q15139 912 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NR0B2Q15466 257 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 LIPNQ5VXI9 398 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FUT10Q6P4F1 479 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ETV3LQ6ZN32 361 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GAREM2Q75VX8 874 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 OTOAQ7RTW8 1153 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SZRD1Q7Z422 152 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PRPF39Q86UA1 669 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TBC1D10CQ8IV04 446 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TTC29Q8NA56 475 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RAET1EQ8TD07 263 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ROBO4Q8WZ75 1007 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 OR1E3Q8WZA6 343 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF707Q96C28 371 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 COX4I2Q96KJ9 171 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 HSPA12BQ96MM6 686 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF578Q96N58 590 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 C17orf62Q9BQA9 187 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF717Q9BY31 904 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 POTEKPQ9BYX7 375 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 BLZF1Q9H2G9 400 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SIAEQ9HAT2 523 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TDP1Q9NUW8 608 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM120CQ9NX05 1096 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TAS2R10Q9NYW0 307 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SPASTQ9UBP0 616 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF229Q9UJW7 825 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RBMX2Q9Y388 322 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CDY2AQ9Y6F7 541 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA1217Q5T5P2 1943 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 IRS2Q9Y4H2 1338 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 A0A1W2PRV1 198 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 C2orf74A8MZ97 194 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 RNF225M0QZC1 329 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 PPM1DO15297 605 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 PHGDHO43175 533 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 NUDT21O43809 227 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 N4BP1O75113 896 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CLPXO76031 633 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 IFNA16P05015 189 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 FABP1P07148 127 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 RALBP11234 206 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CCDC130P13994 396 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 PKMP14618 531 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 NCF2P19878 526 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 ATP6V1C1P21283 382 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CALB2P22676 271 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms