RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ZNF776Q68DI1 518 aaPredicted RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 ZFP1Q6P2D0 407 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 FRMD7Q6ZUT3 714 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 KBTBD6Q86V97 674 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 DEFB107AQ8IZN7 70 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 KYQ8NBH2 561 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.56□□□□□ -0.56
VRK3-223ENST00000601341 CLPTM1LQ96KA5 538 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 PLEKHG4BQ96PX9 1271 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 ECSITQ9BQ95 431 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 TRMOQ9BU70 441 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 RAD18Q9NS91 495 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 INTS10Q9NVR2 710 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 PDP2Q9P2J9 529 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 THEGQ9P2T0 379 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 CDYLQ9Y232 598 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 POMPQ9Y244 141 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 MYLKQ15746 1914 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 A0A1W2PQF6 199 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 H0Y858 1186 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 TK2O00142 265 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 PSMD11O00231 422 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 NEMP1O14524 444 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 AREL1O15033 823 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 PRAMEF1O95521 474 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 F7P08709 466 aaPredicted RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 C1SP09871 688 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 ELFN1P0C7U0 828 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 PIM1P11309 404 aaPredicted RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 ITGALP20701 1170 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 P2RY2P41231 377 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 ABCG1P45844 678 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 SPINT3P49223 89 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 NAGLUP54802 743 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 SLC12A2P55011 1212 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 TBL3Q12788 808 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 GPR33Q49SQ1 333 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 VWA5B1Q5TIE3 1220 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 AGAP9Q5VTM2 703 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 KIAA1211LQ6NV74 962 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 KLC3Q6P597 504 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 FAM151BQ6UXP7 276 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 CERS6Q6ZMG9 384 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 SNX20Q7Z614 316 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 LDB1Q86U70 411 aaPredicted RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 SLC22A9Q8IVM8 553 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 RAVER1Q8IY67 606 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 GPR26Q8NDV2 337 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 MAPK15Q8TD08 544 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 ERLEC1Q96DZ1 483 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 SPDL1Q96EA4 605 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 TTC1Q99614 292 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 EML4Q9HC35 981 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 ZBTB26Q9HCK0 441 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 MRPL40Q9NQ50 206 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 UTP6Q9NYH9 597 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 C6orf203Q9P0P8 240 aaPredicted RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 SUFUQ9UMX1 484 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 NDRG2Q9UN36 371 aaKnown RBP11.56□□□□□ -0.56
VRK3-223ENST00000601341 MYO10Q9HD67 2058 aa11.56□□□□□ -0.56
VRK3-223ENST00000601341 MID1O15344 667 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 GRID2O43424 1007 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 DLX3O60479 287 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 NDUFS3O75489 264 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 PIK3R1P27986 724 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 RPS14P62263 151 aaKnown RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 IRX1P78414 480 aaPredicted RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 CNTN1Q12860 1018 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 RALGDSQ12967 914 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 NFATC2Q13469 925 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 CYLC2Q14093 348 aaPredicted RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 CCNIQ14094 377 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 SEMA3AQ14563 771 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 LSM12Q3MHD2 195 aaKnown RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 PSAPL1Q6NUJ1 521 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 CNSTQ6PJW8 725 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 LIPIQ6XZB0 460 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 TAS2R42Q7RTR8 314 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 PIANPQ8IYJ0 282 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 PGAM4Q8N0Y7 254 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 POU5F2Q8N7G0 328 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 ACVR1CQ8NER5 493 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 RPLP0P6Q8NHW5 317 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 KCTD4Q8WVF5 259 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 DLG3Q92796 817 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 SHDQ96IW2 340 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 SCYL1Q96KG9 808 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 LENG8Q96PV6 779 aaPredicted RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 BTBD9Q96Q07 612 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 FAM192AQ9GZU8 254 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 ASB8Q9H765 288 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 CPSF2Q9P2I0 782 aaKnown RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 XPR1Q9UBH6 696 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 WNT16Q9UBV4 365 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 CA14Q9ULX7 337 aa11.55□□□□□ -0.56
VRK3-223ENST00000601341 MRPS17Q9Y2R5 130 aaKnown RBP11.55□□□□□ -0.56
VRK3-223ENST00000601341 C19orf67A6NJJ6 358 aa11.54□□□□□ -0.56
VRK3-223ENST00000601341 MEI4A8MW99 385 aa11.54□□□□□ -0.56
VRK3-223ENST00000601341 E9PBE3 544 aa11.54□□□□□ -0.56
VRK3-223ENST00000601341 PLK4O00444 970 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms